Wednesday, January 6, 2021

Tefillah #147: Every Generation Gains New Appreciation



דּוֹר לְדוֹר יְשַׁבַּח מַעֲשֶׂיךָ

Every generation will praise your deeds


It was said in the name of the Chiddushei HaRim that this means that in every successive generation your deeds become more praiseworthy.

What does this mean?

Maybe it means that as science develops and discovers more and more, we appreciate Hashem's deeds even more.

A "small" example: The human cell!!!

Cells, the smallest structures capable of maintaining life and reproducing, compose all living things, from single-celled plants to multibillion-celled animals. The human body, which is made up of numerous cells, begins as a single, newly fertilized cell.

Almost all human cells are microscopic in size. To give you an idea how small a cell is, one average-sized adult body, according to one estimate, consists of 100 trillion cells!

Cell Structure

Ideas about cell structure have changed considerably over the years. Early biologists saw cells as simple membranous sacs containing fluid and a few floating particles. Today's biologists know that cells are infinitely more complex than this.



There are many different types, sizes, and shapes of cells in the body. For descriptive purposes, the concept of a "generalized cell" is introduced. It includes features from all cell types. A cell consists of three parts: the cell membrane, the nucleus, and, between the two, the cytoplasm. Within the cytoplasm lie intricate arrangements of fine fibers and hundreds or even thousands of miniscule but distinct structures called organelles.

Cell membrane

Every cell in the body is enclosed by a cell (Plasma) membrane. The cell membrane separates the material outside the cell, extracellular, from the material inside the cell, intracellular. It maintains the integrity of a cell and controls passage of materials into and out of the cell. All materials within a cell must have access to the cell membrane (the cell's boundary) for the needed exchange.

The cell membrane is a double layer of phospholipid molecules. Proteins in the cell membrane provide structural support, form channels for passage of materials, act as receptor sites, function as carrier molecules, and provide identification markers.

Nucleus and Nucleolus

The nucleus, formed by a nuclear membrane around a fluid nucleoplasm, is the control center of the cell. Threads of chromatin in the nucleus contain deoxyribonucleic acid (DNA), the genetic material of the cell. The nucleolus is a dense region of ribonucleic acid (RNA) in the nucleus and is the site of ribosome formation. The nucleus determines how the cell will function, as well as the basic structure of that cell.

Cytoplasm

The cytoplasm is the gel-like fluid inside the cell. It is the medium for chemical reaction. It provides a platform upon which other organelles can operate within the cell. All of the functions for cell expansion, growth and replication are carried out in the cytoplasm of a cell. Within the cytoplasm, materials move by diffusion, a physical process that can work only for short distances.

Cytoplasmic organelles

Cytoplasmic organelles are "little organs" that are suspended in the cytoplasm of the cell. Each type of organelle has a definite structure and a specific role in the function of the cell. Examples of cytoplasmic organelles are mitochondrion, ribosomes, endoplasmic reticulum, golgi apparatus, and lysosomes.


Laying out the information storage capacity of the genome

The human genome contains the complete genetic information of the organism as DNA sequences stored in 23 chromosomes (22 autosomal chromosomes and one X or Y sex chromosome), structures that are organized from DNA and protein. A DNA molecule consists of two strands that form the iconic double-helix “twisted ladder”, whose backbone, which made of sugar and phosphate molecules, is connected by rungs of nitrogen-containing bases. DNA is composed of 4 different bases: Adenine (A), Thymine (T), Cytosine (C), and Guanine (G). These bases are always paired in such a way that Adenine connects to Thymine, and Cytosine connects to Guanine. These pairings produce 4 different base pair possibilities: A-T, T-A, G-C, and C-G. The haploid human genome (containing only 1 copy of each chromosome) consists of roughly 3 billion of these base pairs grouped into 23 chromosomes. A human being inherits two sets of genomes (one from each parent), and thus two sets of chromosomes, for a total of 46 chromosomes, representing the diploid genome, which contains about 6×10^9 base pairs.

Comparing the genome to computer data storage

In order to represent a DNA sequence on a computer, we need to be able to represent all 4 base pair possibilities in a binary format (0 and 1). These 0 and 1 bits are usually grouped together to form a larger unit, with the smallest being a “byte” that represents 8 bits. We can denote each base pair using a minimum of 2 bits, which yields 4 different bit combinations (00, 01, 10, and 11). Each 2-bit combination would represent one DNA base pair. A single byte (or 8 bits) can represent 4 DNA base pairs. In order to represent the entire diploid human genome in terms of bytes, we can perform the following calculations:

6×10^9 base pairs/diploid genome x 1 byte/4 base pairs = 1.5×10^9 bytes or 1.5 Gigabytes, about 2 CDs worth of space! Or small enough to fit 3 separate genomes on a standard DVD!

Data storage across the whole organism

Some interesting questions could follow. For example, how many megabytes of genetic data are stored in the human body? For simplicity’s sake, let’s ignore the microbiome (all non-human cells that live in our body), and focus only on the cells that make up our body. Estimates for the number of cells in the human body range between 10 trillion and 100 trillion. Let us take 100 trillion cells as the generally accepted estimate. So, given that each diploid cell contains 1.5 GB of data (this is very approximate, as I am only accounting for the diploid cells and ignoring the haploid sperm and egg cells in our body), the approximate amount of data stored in the human body is:

1.5 Gbytes x 100 trillion cells = 150 trillion Gbytes or 150×10^12 x 10^9 bytes = 150 Zettabytes (10^21)!!!

WOOWWWWW!!!!! 

מה רבו מעשיך השם!!

Or for our purposes: דור לדור ישבח מעשיך!!!!!!!!!!!!!!!!!!!!!!